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<apm_do_not_touch> in JS file failing</apm_do_not_touch>
APM_DO_NOT_TOUCH is a part of the HTML-rewrite-patcher, there isn't a corresponding one for JS files.
You might want to try "minimal patching" mode:
There are also some other settings such as "javascript patching" which you can disable.
We generally recommend to avoid usage of Portal Access for new deployments. The primary reason it was developed was for older web apps that required multiple hosts and ports that were difficult to tunnel through a single URL. Modern apps typically do not have this concern and can be published with a single DNS enty / port combination.
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