AS3 integration with third party certificate management (Venafi)

Hello!
I am starting a new environment in which I would like to be deployed with AS3.
I do manage and deploy my certificates using a third-party tool called Venafi.
So, my dilemma is that after the deployment of a new VIP, the previous certificate (profile and certificate) are removed, as the AS3 is the source-of-truth.

Any ideas if I missing something? Maybe I can "tell" AS3 not to over-ride any existing configs?

Thank you

J