After upgrading from PeopleTools 8.59.11 to 8.61.11 F5 APM is not rewriting the internal URLs

After upgrading from PeopleTools 8.59.09 to 8.61.11 F5 APM is not rewriting all the internal urls for PeopleSoft Portal Application that also has Home page tiles from HRMS 9.2. Clicking on these tiles takes us to Internal URL instead of F5 externally resolvable url. How to troubleshoot this. I have a case opened with F5 support, but interested in any one else using F5 APM for peoplesoft and seeing similar error.