Cert Bundle Manager

I have a bundle file that contains many certs from many organizations maintained in one big pem file.  maintaining this one massive bundle file is to cumbersome.  

I am thinking of using bundle manager and break apart this massive bundle file where each organization has its own bundle file.  I would then add each organization bundle in the bundle manager.  when the time came that an organization bundle needed to be updated, I would create a new bundle for that organization, upload to the F5 and then add to the bundle manager, click the option update, finish.

Has anybody encountered issues with using the bundle manager.  For example,  when updating the bundle manager in a HA configuration could there be any issues while the F5 are sync'ing, for example possible race condition or any other possible issues.

bundle manager

----- organization one bundle

----- organization two bundle

----- organization three bundle

----- organization four bundle

----- organization five bundle

----- organization six bundle